| Pick | Owner | Pos | Player | Rnd | Year | ||
| Round 1 | |||||||
| 1 | Chris | SP | Roy Halladay | 1 | 13 | ||
| 2 | Paul | SP | Felix Hernandez | 1 | 13 | ||
| 3 | Dave | 1B | Joey Votto | 1 | 13 | ||
| 4 | Rick | SP | Jon Lester | 1 | 13 | ||
| 5 | Eric | SP | Cliff Lee | 1 | 13 | ||
| 6 | Farrelly | OF | Matt Holliday | 1 | 13 | ||
| 7 | Jeff | SP | Josh Johnson | 1 | 13 | ||
| Round 2 | |||||||
| 8 | Jeff | OF | Jacoby Ellsbury | 2 | 13 | ||
| 9 | Farrelly | 3B | Alex Rodriguez | 2 | 13 | ||
| 10 | Eric | 1B | Ryan Howard | 2 | 13 | ||
| 11 | Dave | OF | Jay Bruce | 2 | 13 | ||
| 12 | Craig | SP | Dan Haren | 2 | 13 | ||
| 13 | Paul | 3B | Kevin Youkilis | 2 | 13 | ||
| 14 | Chris | SP | Chris Carpenter | 2 | 13 | ||
| Round 3 | |||||||
| 15 | Scott | 2B | Brandon Phillips | 3 | 13 | ||
| 16 | Paul | 3B | Aramis Ramirez | 3 | 13 | ||
| 17 | Chris | SP | Zach Greinke | 3 | 13 | ||
| 18 | Dave | SS | Jimmy Rollins | 3 | 13 | ||
| 19 | Farrelly | OF | Shane Victorino | 3 | 13 | ||
| 20 | Craig | 1B | Justin Morneau | 3 | 13 | ||
| Round 4 | |||||||
| 21 | Craig | 2B | Chase Utley | 4 | 13 | ||
| 22 | Eric | OF | B.J. Upton | 4 | 13 | ||
| 23 | Steve | OF | Curtis Granderson | 4 | 13 | ||
| 24 | Farrelly | SP | Chad Billingsley | 4 | 13 | ||
| 25 | Jeff | RP | Joakim Soria | 4 | 13 | ||
| 26 | Rick | 3B | Michael Young | 4 | 13 | ||
| 27 | Scott | OF | Chris Young | 4 | 13 | ||
| Round 5 | |||||||
| 28 | Jeff | RP | Mariano Rivera | 5 | 13 | ||
| 29 | Chris | SS | Derek Jeter | 5 | 13 | ||
| 30 | Dave | SP | Shaun Marcum | 5 | 13 | ||
| 31 | Steve | SP | Matt Garza | 5 | 13 | ||
| 32 | Craig | OF | Nick Swisher | 5 | 13 | ||
| 33 | Farrelly | SP | Wandy Rodriguez | 5 | 13 | ||
| Round 6 | |||||||
| 34 | Mike | SP | Carlos Quentin | 6 | 13 | ||
| 35 | Craig | OF | Carlos Lee | 6 | 13 | ||
| 36 | Scott | SP | Colby Lewis | 6 | 13 | ||
| 37 | Steve | SP | Daniel Hudson | 6 | 13 | ||
| 38 | Dave | DH | Vladimir Guerrero | 6 | 13 | ||
| 39 | Rick | SS | Alexei Ramirez | 6 | 13 | ||
| 40 | Chris | 3B | Casey McGehee | 6 | 13 | ||
| 41 | Jeff | SS | Stephen Drew | 6 | 13 | ||
| Round 7 | |||||||
| 42 | Rick | RP | Jonathan Papelbon | 7 | 13 | ||
| 43 | Farrelly | RP | Brian Wilson | 7 | 13 | ||
| 44 | Dave | RP | Francisco Rodriguez | 7 | 13 | ||
| 45 | Eric | 2B | Brian Roberts | 7 | 13 | ||
| 46 | Mike | OF | Adam Jones | 7 | 13 | ||
| 47 | Steve | 2B | Aaron Hill | 7 | 13 | ||
| 48 | Jeff | OF | Nick Markakis | 7 | 13 | ||
| Round 8 | |||||||
| 49 | Paul | SP | John Danks | 8 | 13 | ||
| 50 | Jeff | C | Miguel Montero | 8 | 13 | ||
| 51 | Steve | SP | Johan Santana | 8 | 13 | ||
| 52 | Scott | RP | Matt Thornton | 8 | 13 | ||
| 53 | Eric | RP | Jonathan Broxton | 8 | 13 | ||
| 54 | Guilmet | RP | Chris Perez | 8 | 13 | ||
| 55 | Farrelly | C | Kurt Suzuki | 8 | 13 | ||
| 56 | Rick | C | Geovany Soto | 8 | 13 | ||
| 57 | Craig | OF | Torii Hunter | 8 | 13 | ||
| Round 9 | |||||||
| 58 | Steve | C | Mike Napoli | 9 | 13 | ||
| 59 | Chris | SP | Ted Lilly | 9 | 13 | ||
| 60 | Paul | OF | Michael Bourn | 9 | 13 | ||
| 61 | Eric | SP | Ricky Nolasco | 9 | 13 | ||
| 62 | Mike | RP | John Axford | 9 | 13 | ||
| 63 | Guilmet | OF | Jason Bay | 9 | 13 | ||
| 64 | Dave | OF | Juan Pierre | 9 | 13 | ||
| 65 | Farrelly | OF | Angel Pagan | 9 | 13 | ||
| 66 | Rick | 2B | Howie Kendrick | 9 | 13 | ||
| 67 | Scott | SP | Ryan Dempster | 9 | 13 | ||
| Round 10 | |||||||
| 68 | Scott | SP | Ian Kennedy | 10 | 13 | ||
| 69 | Rick | RP | Jose Valverde | 10 | 13 | ||
| 70 | Farrelly | OF | Alfonso Soriano | 10 | 13 | ||
| 71 | Dave | C | Chris Iannetta | 10 | 13 | ||
| 72 | Guilmet | RP | Aaron Bailey | 10 | 13 | ||
| 73 | Mike | RP | Drew Storen | 10 | 13 | ||
| 74 | Chris | RP | Huston Street | 10 | 13 | ||
| 75 | Steve | DH | Adam Lind | 10 | 13 | ||
| 76 | Jeff | SP | Ricky Romero | 10 | 13 | ||
| Round 11 | |||||||
| 77 | Chris | RP | Francisco Cordero | 11 | 13 | ||
| 78 | Mike | SP | James Shields | 11 | 13 | ||
| 79 | Dave | 1B | Derrek Lee | 11 | 13 | ||
| 80 | Rick | SP | Brett Myers | 11 | 13 | ||
| 81 | Farrelly | SP | Josh Beckett | 11 | 13 | ||
| 82 | Paul | OF | Austin Jackson | 11 | 13 | ||
| 83 | Eric | C | Jorge Posada | 11 | 13 | ||
| 84 | Steve | OF | Manny Ramirez | 11 | 13 | ||
| 85 | Craig | OF | Rajai Davis | 11 | 13 | ||
| Round 12 | |||||||
| 86 | Craig | OF | Bobby Abreu | 12 | 13 | ||
| 87 | Steve | SP | Trevor Cahill | 12 | 13 | ||
| 88 | Jeff | 1B | Carlos Pena | 12 | 13 | ||
| 89 | Eric | 2B | Chone Figgins | 12 | 13 | ||
| 90 | Guilmet | RP | Ryan Franklin | 12 | 13 | ||
| 91 | Paul | 1B | Adam LaRoche | 12 | 13 | ||
| 92 | Farrelly | C | Carlos Ruiz | 12 | 13 | ||
| 93 | Rick | RP | J.J. Putz | 12 | 13 | ||
| 94 | Dave | C | John Jaso | 12 | 13 | ||
| 95 | Chris | 2B | Neil Walker | 12 | 13 | ||
| Round 13 | |||||||
| 96 | Rick | 1B | Aubrey Huff | 13 | 13 | ||
| 97 | Farrelly | RP | Joel Hanrahan | 13 | 13 | ||
| 98 | Mike | SS | Ian Desmond | 13 | 13 | ||
| 99 | Guilmet | SP | Edinson Volquez | 13 | 13 | ||
| Round 14 | |||||||
| 100 | Guilmet | SP | Travis Wood | 14 | 13 | ||
| 101 | Dave | RP | Leo Nunez | 14 | 13 | ||
| 102 | Scott | RP | Craig Kimbrel | 14 | 13 | ||
| 103 | Mike | SP | Javier Vazquez | 14 | 13 | ||
| 104 | Farrelly | OF | Denard Span | 14 | 13 | ||
| 105 | Craig | SP | C.J. Wilson | 14 | 13 | ||
| 106 | Eric | RP | Brad Lidge | 14 | 13 | ||
| 107 | Rick | SP | Jair Jurrjens | 14 | 13 | ||
| 108 | Paul | RP | Brandon Lyon | 14 | 13 | ||
| Round 15 | |||||||
| 109 | Steve | OF | Domonic Brown | 15 | 13 | ||
| 110 | Guilmet | SP | Ervin Santana | 15 | 13 | ||
| 111 | Craig | RP | Kevin Gregg | 15 | 13 | ||
| 112 | Chris | OF | Travis Snider | 15 | 13 | ||
| 113 | Eric | SP | Michael Pineda | 15 | 13 | ||
| 114 | Dave | OF | Carlos Beltran | 15 | 13 | ||
| 115 | Paul | SP | Jaime Garcia | 15 | 13 | ||
| 116 | Mike | 3B | Chipper Jones | 15 | 13 | ||
| 117 | Scott | SP | John Lackey | 15 | 13 | ||
| 118 | Jeff | OF | Jose Tabata | 15 | 13 | ||
| Round 16 | |||||||
| 119 | Jeff | SS | Alcides Escobar | 16 | 13 | ||
| 120 | Scott | 1B | Kila Ka'aihue | 16 | 13 | ||
| 121 | Mike | 3B | Edwin Encarnacion | 16 | 13 | ||
| 122 | Dave | OF | Luke Scott | 16 | 13 | ||
| 123 | Eric | 1B | Gaby Sanchez | 16 | 13 | ||
| 124 | Chris | SP | Adam Wainwright | 16 | 13 | ||
| 125 | Guilmet | OF | Ryan Raburn | 16 | 13 | ||
| 126 | Rick | SP | Stephen Strasburg | 16 | 13 | ||
| 127 | Steve | RP | David Aardsma | 16 | 13 | ||
| Round 17 | |||||||
| 128 | Mike | 2B | Danny Espinosa | 17 | 13 | ||
| 129 | Guilmet | SP | Edwin Jackson | 17 | 13 | ||
| 130 | Dave | OF | Ryan Ludwick | 17 | 13 | ||
| 131 | Paul | OF | Grady Sizemore | 17 | 13 | ||
| 132 | Craig | SP | Brandon Webb | 17 | 13 | ||
| 133 | Scott | OF | Andres Torres | 17 | 13 | ||
| Round 18 | |||||||
| 134 | Scott | 1B | Ike Davis | 18 | 13 | ||
| 135 | Guilmet | OF | Coco Crisp | 18 | 13 | ||
| Round 19 | |||||||
| 136 | Mike | OF | Marlon Byrd | 19 | 13 | ||
| 137 | Paul | SS | Erick Aybar | 19 | 13 | ||
| 138 | Scott | OF | Josh Willingham | 19 | 13 | ||
| 139 | Guilmet | SS | Tsuyoshi Nishioka | 19 | 13 | ||
| 140 | Steve | RP | Fernando Rodney | 19 | 13 | ||
| Round 20 | |||||||
| 141 | Farrelly | OF | Logan Morrison | 20 | 13 | ||
| 142 | Rick | 1B | Mitch Moreland | 20 | 13 | ||
| 143 | Guilmet | C | John Buck | 20 | 13 | ||
| 144 | Scott | SS | J.J. Hardy | 20 | 13 | ||
| 145 | Paul | RP | Frank Francisco | 20 | 13 | ||
| 146 | Chris | 1B | Freddie Freeman | 20 | 13 | ||
| 147 | Dave | SP | JA Happ | 20 | 13 | ||
| 148 | Eric | SP | Kyle Drabek | 20 | 13 | ||
| 149 | Mike | C | J.P. Arencibia | 20 | 13 | ||
| 150 | Jeff | SP | Jake Peavy | 20 | 13 | ||
| 151 | Craig | DH | Jim Thome | 20 | 13 | ||
| Round 21 | |||||||
| 152 | Rick | 3B | Ian Stewart | 21 | 13 | ||
| 153 | Steve | SP | Daisuke Matsuzaka | 21 | 13 | ||
| 154 | Jeff | C | Miguel Olivo | 21 | 13 | ||
| 155 | Guilmet | SS | Asdrubal Cabrera | 21 | 13 | ||
| 156 | Chris | 1B | Brandon Belt | 21 | 13 | ||
| 157 | Paul | C | Yadier Molina | 21 | 13 | ||
| 158 | Mike | C | Jarrod Saltalamacchia | 21 | 13 | ||
| 159 | Craig | C | A.J. Pierzynski | 21 | 13 | ||
| 160 | Eric | OF | Tyler Colvin | 21 | 13 | ||
| 161 | Scott | C | Josh Thole | 21 | 13 | ||
| Round 22 | |||||||
| 162 | Scott | RP | Jose Contreras | 22 | 13 | ||
| 163 | Eric | C | Russell Martin | 22 | 13 | ||
| 164 | Craig | RP | Jonny Venters | 22 | 13 | ||
| 165 | Mike | RP | Jake McGee | 22 | 13 | ||
| 166 | Paul | SP | Anibal Sanchez | 22 | 13 | ||
| 167 | Chris | OF | Michael Cuddyer | 22 | 13 | ||
| 168 | Guilmet | SP | Bud Norris | 22 | 13 | ||
| 169 | Jeff | SP | Brandon Beachy | 22 | 13 | ||
| 170 | Steve | SS | Jhonny Peralta | 22 | 13 | ||
| Round 23 | |||||||
| 171 | Guilmet | OF | Jason Kubel | 23 | 13 | ||
| 172 | Rick | C | Nick Hundley | 23 | 13 | ||
| 173 | Paul | OF | Will Venable | 23 | 13 | ||
| 174 | Mike | SP | Kyle McClellan | 23 | 13 | ||
| 175 | Steve | 3B | Chris Johnson | 23 | 13 | ||
| 176 | Farrelly | SP | Jorge De La Rosa | 23 | 13 | ||
| 177 | Chris | C | Alex Avila | 23 | 13 | ||
| 178 | Jeff | OF | Alex Gordon | 23 | 13 | ||
| 179 | Eric | SS | Reid Brignac | 23 | 13 | ||
| 180 | Craig | SS | Juan Uribe | 23 | 13 | ||
| Minors - Round 1 | |||||||
| 1 | Eric | OF | Desmond Jennings | 18X | |||
| 2 | Guilmet | OF | Mike Trout | 18X | |||
| 3 | Farrelly | 3B | Mike Moustakas | 18X | |||
| 4 | Scott | SP | Mike Minor | 18X | |||
| 5 | Jeff | OF | Bryce Harper | 18X | |||
| 6 | Chris | 2B | Dustin Ackley | 18X | |||
| 7 | Rick | SP | Julio Teheran | 18X | |||
| 8 | Paul | SP | Casey Kelly | 18X | |||
| 9 | Mike | C | Devin Mesoraco | 18X | |||
| 10 | Craig | 1B | Eric Hosmer | 18X | |||
| 11 | Steve | SP | Shelby Miller | 18X | |||
| 12 | Dave | SS | Jose Iglesias | 18X | |||
| Minors - Round 2 | |||||||
| 13 | Dave | OF | Chris Carter | 19X | |||
| 14 | Steve | SP | Zach Britton | 19X | |||
| 15 | Craig | C | Will Meyers | 19X | |||
| 16 | Mike | OF | Jason Kipnis | 19X | |||
| 17 | Paul | SP | Taylor Scheppers | 19X | |||
| 18 | Rick | SP | Kyle Gibson | 19X | |||
| 19 | Chris | SP | Mike Montgomery | 19X | |||
| 20 | Jeff | 1B | Anthony Rizzo | 19X | |||
| 21 | Scott | SP | Jarrod Parker | 19X | |||
| 22 | Farrelly | SP | Manuel Banuelos | 19X | |||
| 23 | Guilmet | SP | Martin Perez | 19X | |||
| 24 | Eric | SP | Matt Moore | 19X | |||
| Minors - Round 3 | |||||||
| 25 | Eric | 3B | Lonnie Chisenhall | 20X | |||
| 26 | Guilmet | C | Hank Conger | 20X | |||
| 27 | Farrelly | 3B | Brett Lawrie | 20X | |||
| 28 | Scott | OF | Michael Taylor | 20X | |||
| 29 | Jeff | SP | Jeremy Jeffress | 20X | |||
| 30 | Chris | SP | Zach Wheeler | 20X | |||
| 31 | Rick | OF | Aaron Hicks | 20X | |||
| 32 | Paul | OF | Lucas Duda | 20X | |||
| 33 | Mike | SP | Jameson Taillon | 20X | |||
| 34 | Craig | SS | Grant Green | 20X | |||
| 35 | Steve | SP | Simon Castro | 20X | |||
| 36 | Dave | 3B | Dayan Viciedo | 20X | |||